Carbon nanosol-induced assemblage of a plant-beneficial microbiome consortium | Journal of Nanobiotechnology
Verma SK, Gantait S, Kumar V, Gurel E. Applications of carbon nanomaterials in the plant system: a perspective view on the pros and cons. Sci Total Environ. 2019;667:485–99.
Khodakovskaya M, Mahmood M, Xu Y, Li Z. Carbon nanotubes are able to penetrateplant seed coat and dramatically afect seed germination and plant growth. ACS Nano. 2009;3:3221–7.
Cañas JE, Nations S, Vadan R, Dai L, Luo M, Ambikapathi R, Lee EH, Olszyk D, Efects of functionlized and nonfunctionlized single-walled carbon nonatubes on root elongation of select crop species. Environ Toxicol Chem 2008;27(1):1922–31
Kumar A, Panigrahy M, Sahoo PK, Panigrahi KCS. Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana. Plant Cell Rep. 2018;37:901–12.
Kole C, Randunu KM, Choudhary P, Podila R, Ke PC, Rao AM, Marcus RK. Nanobiotechnology can boost crop production and quality: first evidence from increased plant biomass, fruit yield and phytomedicine content in bitter melon (Momordica charantia). BMC Biotechnol. 2013;13:37–10.
Guo X, Wang R, Zhang H, Xing B, Naeem M, Yao T, Li R, Xu R, Zhang Z, Wu J. Effects of graphene oxide on tomato growth in different stages. Plant Physiol Biochem. 2021;162:447–55.
Khodakovskaya MV, Biris AS, Dervishi E, Villagarcia H. Carbon nanotubes induce growth enhancement of tobacco cells. ACS Nano. 2012;27:2128–35.
Khodakovskaya MV, Nedosekin DA, Dervishi E, Biris AS, Shashkov EV, Galanzha EI, Zharov VP. Complex genetic, photothermal, and photoacoustic analysis of nanoparticle-plant interactions. Proc Natl Acad Sci U S A. 2011;108(3):1028–33.
Shekhawat GS, Rajput P, Rajput VD, Minkina T, Singh RK. Role of engineered carbon nanoparticles (CNPs) in promoting growth and metabolism of Vigna radiata (L.) Wilczek: Insights into the biochemical and physiological responses. Plants (Basel). 2021;10(7):1317.
Tiwari DK, Villaseñor Cendejas LM, Villegas J, Carreto Montoya L, Borjas García SE. Interfacing carbon nanotubes (CNT) with plants: enhancement of growth, water and ionic nutrient uptake in maize (Zea mays) and implications for nanoagriculture. Appl Nanosci. 2014;4(5):577–91.
Li X, Jousset A, de Boer W, et al. Legacy of land use history determines reprogramming of plant physiology by soil microbiome. ISME J. 2019;13:738–51.
Fitzpatrick CR, Wang PW, Guttman DS, Kotanen PM, Johnson MTJ. Assembly and ecological function of the root microbiome across angiosperm plant species. Proc Natl Acad Sci USA. 2018;22:1157–65.
Raaijmakers JM. Soil immune responses. Science. 2016;352:1392–3.
Della Mónica IF, Stefanoni Rubio PJ, Vaca-Paulín R, Yañez-Ocampo G. Exploring plant growth-promoting rhizobacteria as stress alleviators: a methodological insight. Arch Microbiol. 2022;204(6):316.
Bhattacharyya PN. Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture. World J Microbiol iotechnol. 2012;28(4):1327–50.
Ryu CM, Hu CH, Reddy MS, Wei HX, Paré PW, Kloepper JW. Bacterial volatiles promote growth in Arabidopsis. Proc Natl Acad Sci U S A. 2003;100:4927–32.
Wu F, Zhang X, Zhang H, Chen W, Yang Y, Werner D, Tao S, Wang X. Effects of various carbon nanotubes on soil bacterial community composition and structure. Environ Sci Technol. 2019;53(10):5707–16.
Cheng J, Li X, Yu Y. Effects of modified nanoscale carbon black on plant growth, root cellular morphogenesis, and microbial community in cadmium-contaminated soil. Environ Sci Pollut Res Int. 2020;27(15):18423–33.
Chen L, Li X, Liang T, Nie C, Xie F, Liu K, Peng X, Xie J. Carbon nanoparticles enhance potassium uptake via upregulating potassium channel expression and imitating biological ion channels in BY-2 cells. J Nanobiotechnol. 2020;18:21.
Tarroum M, Al-Qurainy F, Ali AAM, Al-Doss A, Fki L, Hassairi A. A novel PGPF Penicillium olsonii isolated from the rhizosphere of Aeluropus littoralis promotes plant growth, enhances salt stress tolerance, and reduces chemical fertilizers inputs in hydroponic system. Front Microbiol. 2022;13:996054.
Tarroum M, Ali AAM, Al-Qurainy F, Al-Doss A, Fki L, Hassairi A. Harnessing the rhizosphere of the halophyte grass Aeluropus littoralis for halophilic plant-growth-promoting fungi and evaluation of their biostimulant activities. Plants (Basel). 2021;10:784.
Hang X, Ou Y, Shao C, Xiong W, Zhang N, Liu H, Li R, Shen Q, Kowalchuk GA. Trichoderma-amended biofertilizer stimulates soil resident Aspergillus population for joint plant growth promotion. NPJ Biofilms Microbiomes. 2022;8:57.
Yang J, Li HJ, Yin QS, Zhang YL, Zhou HP, Zhang SX. Effects of nano-carbon sol on physiological characteristics of root system and potassium absorption of flue-cured tobacco. Yancao Keji. 2015;48(1):7–11.
Berendsen RL, Bakker PA. The rhizosphere microbiome and plant health. Trends Plant Sci. 2012;17:478–86.
Mhatre PH, Kadirvelu K, Divya KL, Venkatasalam EP, Srinivasan S, Ramkumar G, Saranya C, Shanmuganathan R. Plant Growth Promoting Rhizobacteria (PGPR): a potential alternative tool for Nematodes bio-control. Biocatal Agric Biotechnol. 2018;17:119–28.
Woo SL, Lorito M, Monte E. Trichoderma: a multipurpose, plant-beneficial microorganism for eco-sustainable agriculture. Nat Rev Microbiol. 2023;21(5):312–26.
Sharma M, Singh DN, Negi RK. The genus Sphingopyxis: systematics, ecology, and bioremediation potential. J Environ Manage. 2021;280:111744.
Kertesz MA, Hydrocarbon-Degrading Sphingomonads: Sphingomonas, Sphingobium, Novosphingobium, and Sphingopyxis, in Handbook of Hydrocarbon and Lipid Microbiology, T. KN, Editor. 2010, Springer: Berlin, Heidelberg. p. 1693–1705.
Boss BL, Zaslow SJ, Normile TG, Izquierdo JA. Comparative genomics of the plant-growth promoting bacterium Sphingobium sp. strain AEW4 isolated from the rhizosphere of the beachgrass Ammophila breviligulata. BMC Genom. 2022;23:508.
Krishnan R, Busse HJ, Tanaka N, Krishnamurthi S, Rameshkumar N. Novosphingobium pokkalii sp. nov., a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Res Microbiol. 2017;168(2):113–21.
Sukweenadhi J, Kang CH, et al. Sphingomonas panaciterrae sp. nov., a plant growth-promoting bacterium isolated from soil of a ginseng feld. Arch Microbiol. 2015;197:973–81.
Battu L, Goud BS, Ulaganathan K, Kandasamy U. Genome inside genome: NGS based identifcation and assembly of endophytic Sphingopyxis granuli and Pseudomonas aeruginosa genomes from rice genomic reads. Genomics. 2017;109:141–6.
Dias ACF, Andreote FD, Lacava PT, Teixeira MA, Assumpção LC. Isolation of micropropagated strawberry endophytic bacteria and assessment of their potential for plant growth promotion. World J Microbiol iotechnol. 2009;25:189–95.
Dias AC, et al. Isolation of micropropagated strawberry endophytic bacteria and assessment of their potential for plant growth promotion. World J Microbiol Biotechnol. 2009;25:189–95.
Jaiswal AK, Paudel I, Graber ER, Cytryn E, Frenkel O. Linking the belowground microbial composition, diversity and activity to soilborne disease suppression and growth promotion of tomato amended with biochar. Sci Rep. 2017;7:44382.
Long HH, Schmidt DD, Baldwin IT. Native bacterial endophytes promote host growth in a species-specific manner; phytohormone manipulations do not result in common growth responses. PLoS ONE. 2008;3(7): e2702.
Mendes LW, Navarrete AA, van Veen JA, Tsai SM. Taxonomical and functional microbial community selection in soybean rhizosphere. ISME J. 2014;8(8):1577–87.
Ofek-Lalzar M, Goldman-Voronov M, Green SJ, Hadar Y, Minz D. Niche and host-associated functional signatures of the root surface microbiome. Nat Commun. 2014;5:4950.
Panke-Buisse K, Goodrich JK, Ley RE, Kao-Kniffin J. Selection on soil microbiomes reveals reproducible impacts on plant function. ISME J. 2015;9:980–9.
Overvoorde P, Beeckman T. Auxin control of root development. Cold Spring Harb Perspect Biol. 2010;2(6):a001537.
Wang Y, Ji Z, Bouchard DC, Nisbet RM, Schimel JP, Gardea-Torresdey JL, Holden PA. Agglomeration determines effects of carbonaceous nanomaterials on soybean nodulation, dinitrogen fixation potential, and growth in soil. ACS Nano. 2017;11:5753–65.
Hao Y, Zhang Z, Song Y, Cao W, Guo J, Zhou G, Rui Y, Liu L, Xing B. Carbon nanomaterials alter plant physiology and soil bacterial community composition in a rice-soil-bacterial ecosystem. Environ Pollut. 2018;232:123–36.
Tong ZH, Nies LF, Carroll NJ, Applegate B, Turco RF. Influence of fullerene (C-60) on soil bacterial communities: aqueous aggregate size and solvent co-introduction effects. Sci Rep. 2016. https://doi.org/10.1038/srep28069.
Ren W, Teng Y, Li Z, Li L. Time-dependent effect of graphene on the structure, abundance, and function of the soil bacterial community. J Hazard Mater. 2015;297:286–94.
Khodakovskaya MV, Kim JN, Alimohammadi M, Dervishi E, Mustafa T, Cernigla CE. Carbon nanotubes as plant growth regulators: effects on tomato growth, reproductive system, and soil microbial community. Small. 2013;9:115–23.
Du J, Zhou Q. Graphene oxide regulates the bacterial community and exhibits property changes in soil. RSC Adv. 2015;5:27009–17.
Chen L, Li X, Nie C, Liang T, Xie F. Highly hydrophilic carbon nanoparticles: uptake mechanism by mammalian and plant cells. RSC Adv. 2018;8:35246–56.
Estaki M, Bokulich NA, McDonald D, González A, Kosciolek T, Martino C, Zhu Q, Birmingham A, Vázquez-Baeza Y, Dillon MR, Bolyen E, Caporaso JG, Knight R. QIIME 2 enables comprehensive end-to-end analysis of diverse microbiome data and comparative studies with publicly available data. Curr Protoc Bioinformatics. 2020;1:e100.
Quast C, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41:D590–6.
Nilsson RH, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, Schigel D, Kennedy P, Picard K, Glöckner FO, Tedersoo L, Saar I, Kõljalg U, Abarenkov K. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 2019;8(D1):D259–64.
Douglas GM, Zaneveld JR. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020;38:685–8.
Bastian M, Jacomy M. Gephi: an open source software for exploring and manipulating networks. ICWSM. 2009. https://doi.org/10.1609/icwsm.v3i1.13937.
Love MI, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15(12):550.
Kumar S, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–9.
Poly F, et al. Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties. Appl Environ Microbiol. 2001;67(5):2255–62.
Glick BR. Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiol Res. 2014;169(1):30–9.
Brazelton JN, et al. 2, 4-Diacetylphloroglucinol alters plant root development. Mol Plant Microbe Interact. 2008;21(10):1349–58.
Gruet C, et al. Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway. Appl Soil Ecol. 2022;173: 104363.